Protein Structure
ESMFold predictions · Prediction confidence · functional binding sites
Protein structure coverage
| Species | ESMFold PDBs | Binding site annotation |
|---|---|---|
| Cucumber | 23,736 | GPSite (23,730 genes) |
| Watermelon | 14,901 | — |
| Melon | 27,757 | GPSite (27,757 genes) |
| Pumpkin (C. moschata) | 29,898 | GPSite (29,898 genes) |
| Pumpkin (C. pepo) | 26,813 | GPSite (26,813 genes) |
| BitterGourd | 39,839 | GPSite (39,839 genes) |
| BottleGourd | 21,629 | GPSite (21,629 genes) |
| WaxGourd | 26,897 | GPSite (26,897 genes) |
| SpongeGourd | 30,846 | GPSite (30,846 genes) |
What you get per protein
| 3D Structure | Interactive ESMFold prediction rendered with MolStar (rotate / zoom / residue-level) | |
| Prediction Confidence | Per-residue confidence score: Excellent (>90) / Good (70-90) / Fair (50-70) / Low (<50) | |
| Binding Sites (GPSite) | AI-predicted functional sites: DNA / RNA / Peptide / Protein / ATP / ZN / CA / MG / MN | |
| Residue Annotations | Per-residue amino acid + site type + confidence score (when GPSite JSON is available) | |
| PDB Download | Full PDB file download for offline analysis (PyMOL / ChimeraX / Rosetta) |
AI Summary
- Predict a structure first — then generate a short interpretation of the result
- Covers pLDDT quality, binding-site functional hints, and a practical next step
- Ask follow-ups about this protein after the summary
💡 Try these Gene IDs: (Cucumber) · (Melon) · (Watermelon) · (C. pepo) · (C. moschata)